Rotations and risk management

Crop diversity and crop rotation improve pest management in canola and all other crops. Breaks of at least two years between canola crops will reduce risk from clubroot and blackleg diseases, reduce selection for weed resistance, and increase crop yields.

Scientific research in Western Canada has identified three factors that increase the risk of canola yield loss in short rotations. They are blackleg, clubroot and cabbage root maggot. This article starts with those three then discusses other important benefits from rotation. (The Canola Encyclopedia has a chapter on rotation.)


A one-year break between canola crops can reduce the carryover of the blackleg fungus on canola stubble, but at least two full years (one in three rotation) is recommended to reduce blackleg severity and the risk of yield loss. A three-year break (one in four rotation) can effectively eliminate the yield loss risk from blackleg. (See Figures 1 and 2.) In most cases, blackleg can be managed with a two-year break between canola crops on most fields by using blackleg resistant (R) varieties with effective resistance.

Figure 1. In a study published in 2015, Neil Harker with AAFC showed how breaks between canola crops reduced blackleg incidence. In the 2013 graph, the no-break (“0”) level of incidence is for continuous canola over a six year period.
The black bars represent a blackleg resistance hybrid. The grey bars are results for blackleg-susceptible Westar grown on the same plots.
Figure 2. Severity of blackleg symptoms from rotation studies conducted at Melfort and Scott, Saskatchewan, from 2000 to 2006 (means calculated from 13 sites years.) Resistant (InVigor hybrids) and susceptible (Westar) varieties were grown continuously or every second, third and fourth year with wheat and field pea as rotation crops. The black bars represent a blackleg-resistant hybrid. The grey bars are results for blackleg-susceptible Westar grown on the same plots.

A short rotation increases the risk of selecting for more races of the blackleg pathogen that can overcome current resistance genetics. Scout for potential breakdown of blackleg resistance. Blackleg severity scores of 2 or more in an R hybrid is a sign of resistance breakdown. (See the rating scale below.) On that field, canola may need a three-year break or rotation to hybrids proven to have distinctly different blackleg resistance genetics, to reduce the risk to yield and profit. (Two studies showing rotation benefit for blackleg management: One Two)

Fungicides may provide some yield benefit if applied in early growth stages and only when hybrid resistance is no longer functional.


Pathogen spore load, disease risk and yield loss increase substantially when canola is grown frequently on clubroot infested fields. Growing resistant hybrids is an effective management tool, but crop rotation that provides at least a two-year break (canola then two years with other crops before going back to canola) must be used along with resistance, to maintain the effectiveness of clubroot resistance genes.

Evidence from three rotation studies in Canada (two at Normandin, Quebec, one in Alberta) indicate that two years between host crops (one in three rotation) is the minimum rotation to manage clubroot spores in a field. Thomas Ernst, who did the Alberta study, observed an eight- to 20-fold drop in resting spore concentrations with a two-year break after growing clubroot-resistant canola. With a one-year break, Ernst found that resting spore numbers never drop enough to provide any reduction in risk.

Gary Peng, research scientist with Agriculture and Agri-Food Canada (AAFC) in Saskatoon, led one of the Quebec studies. He found that for fields with heavy clubroot infestation, a two-year break between canola crops can reduce the pathogen inoculum in the soil by up to 90 per cent relative to a one-year break. The pathogen population may stabilize for some time after that, Peng found. Peng adds that this two-year break (one in three rotation) shows a benefit even for R hybrids: “This reduction of pathogen inoculum in the first two years generally increases the yield of even a clubroot-resistant cultivar relative to one-year break,” he says.

Peng assumes this same pace of breakdown occurs with lightly infested or patchy disease fields, but his research was not done on lightly infested ground.

Although research shows that a two-year break (one in three rotation) can greatly reduce inoculum levels on heavily-infested fields, longer breaks between canola crops are important to help lower spore concentrations and protect clubroot resistance. A 90 per cent reduction in spores in a heavily infested field or patch still leaves a significant spore load for infection to occur and potentially break the clubroot resistance used. A longer break combined with patch management is advisable in high spore loads.

Figure 2. Concentration of P. brassicae resting spores in varying canola rotations in Normandin, Quebec from 2009 to 2013. Source: Gary Peng, AAFC
Figure 2. Concentration of P. brassicae resting spores in varying canola rotations in Normandin, Quebec from 2009 to 2013. Source: Gary Peng, AAFC

Cabbage root maggot

An AAFC rotation study showed that with continuous canola, root maggots caused a statistically significant increase in crop damage. A one-year break between canola crops significantly reduced yield loss as a result of root maggots, the study found. No insecticides are available to control root maggot in canola so rotation is especially important to prevent outbreaks of this pest.

Other factors

Sclerotinia stem rot, verticillium stripe and flying insects, such as flea beetle, bertha armyworm moth, diamond back moth, cabbage seedpod weevil and lygus bugs, do increase in severity as canola frequency and overall acres increase. However, these pests can be highly mobile and only a region-wide reduction in canola and other host crops will reduce their risk significantly. Unless canola rotations are long across a region, long rotations on an individual farm will have little risk management benefit for these pests.

Volunteer canola and weed management. A study led by Christian Willenborg with the University of Saskatchewan found that volunteer canola is the major weed associated with continuous canola cultivation. Volunteer canola presents various risks, including yield reduction, unwanted competition to the seeded crop, increased disease build up, and reduced harvest quality — if volunteers mature later and increase green seed counts in the harvest sample.

Other than volunteer canola, relatively few weed species were associated with continuous canola cultivation, the study found. This can be attributed to the high efficacy of the herbicides used in herbicide-tolerant canola production, which provide excellent weed control on a consistent basis.

However, Willenborg emphasizes that while short canola rotations may not have led to any major changes to weed populations at this time, the risk of developing herbicide resistant weeds under continuous canola production is high and extreme caution must be used when incorporating a risky practice such as this into a cropping system.

Rotation among herbicide tolerance systems and use of pre-seed and fall herbicide timing in addition to in-crop application is needed with shorter canola rotations. Rotation with other crops provides expanded options to rotate among herbicide groups, and winter cereals or perennial legumes in the rotation provide an opportunity to use these competitive crops as part of a system of integrated weed management.

Rotation and crop nutrition. Crop nutrition is not a risk factor with shorter canola rotations, however yield reduction can occur in a tight canola rotation if fertilizer rates do not match canola’s high nutrient removal rates. Higher fertilizer rates can compensate for some of the yield loss from shorter canola rotations, but as John O’Donovan’s AAFC rotation research showed, higher nutrient rates cannot completely close the yield gap.

O’Donovan, now retired, looked at canola on canola, canola on wheat, and canola on several pulse residues. Canola responded positively to increasing rates of nitrogen (N) on all residue types including canola. However, at each N rate, yield for canola on canola was less than for canola on the other residue types. Also, the pulse residues generally resulted in higher yields than wheat residue. See the graph below for study results.

Figure 3 small

Soil microbial fauna or soil water availability could also contribute to lower yields for canola on canola stubble, but these factors have not been researched, and the risk — if there is one — is unknown.