Clear patches of canola plants that are ripening prematurely could be diseased. These are obvious places to start a pre-harvest disease survey. Clubroot continues to spread into new areas, so this disease is one possible cause – even in fields with a clubroot-resistant variety. In addition to the obvious patches, check a few random areas in the better producing parts of the field.
What’s the point of disease scouting now? Pre-harvest scouting for diseases is a good way to assess severity and make harvest and next-year plans. Diseases are usually easiest to see and diagnose in the couple of weeks before swath timing. Post-harvest disease surveying can be difficult as disease symptoms have progressed and plants start to decay.
Gather up your scouting toolkit (including clippers and trowel) and head out to the fields. Use scouting results to plan rotations, choose varieties, and update fungicide decision-making for next year.
How to identify major diseases this time of year
Sclerotinia stem rot. Look for areas with lodged or prematurely ripened plants. Brown or bleached plants scattered throughout your green crop may indicate a low level infection. Sclerotinia stem rot is most damaging when stem infection is early, and severe to the point where whole plants die before seed matures. Examine the lower to middle areas of the stem looking for large bleached or tan lesions. In some cases, white fungal growth may even appear on green stems. (You may find infection very low on the stem, often where infected leaves fell against stems at ground level.) As the infected stem dries, it will appear bleached or brown – like a bone – and may start to crack open or shred. Infected stem tissue is often hollow and hard, black sclerotia bodies – similar in appearance to mouse droppings – may be found inside the infected stems. Sclerotinia can be found higher up in the canopy on side branches and pods, but yield loss for these infection sites is usually minimal compared to lower stem infections. See the table at the bottom for a good comparison of stem diseases. As a general rule, yield losses due to Sclerotinia stem rot will be approximately equivalent to 50 per cent of the disease incidence. For example, if 10 per cent of stems are infected, yield loss will be about half that — or five per cent. Moist conditions through to harvest can cause continued germination of sclerotia and emergence of apothecia. If this late-season spore release does cause lesions on decomposing leaves, these lesions will form too late to cause any additional yield loss. Read more.
Blackleg. Look for areas with lodged or prematurely ripened plants. Examine the bottom to middle areas of the stem for lesions. Black pepper-like specks (pycnidia) may appear within the lesions. When blackleg is severe enough to cause yield loss, the plant will have irregular, knotty, woody cankers at the base of the stem. This infection will eventually grow through the stem, cutting off nutrient flow. If you see plants drying up, pull up the plants and use garden clippers to slice through the top of the root, about half an inch below the base of the stem. If more than half the area of the stem is blackened, blackleg has likely reduced the yield of that plant. How to rate a crop for blackleg. If blackleg levels are higher than expected even with a fungicide, check notes to see the timing of the fungicide. To be effective, a fungicide labelled for blackleg should be applied at the 2- to 4-leaf stage of the crop with appropriate rate and water volume. If seeing blackleg infection, consider lengthening this field’s rotation and changing to a different major resistance (R) gene or source of resistance.
In the weeks before harvest, you can also find late-developing blackleg lesions higher in the canola. Look for pycnidia in upper stem lesions as a sign of blackleg. These could be caused by the less virulent L. biglobosa blackleg pathogen, which rarely has enough time in Western Canada to cause major yield loss.
Clubroot. Above-ground symptoms, including wilting and pre-mature ripening, should be evident in severely-infected plants. Plants may be infected with clubroot even if above-ground symptoms are not present. It is important to pull or dig up plants to examine the roots for clubroot galls. When scouting for clubroot it is important to examine the roots of plants at the field entrance, low spots or areas with premature ripening. Light or severe infection has essentially the same risk for spreading the disease with equipment. If galls are present, mark the patch and pull plants around infected plants to identify the full area of infection. Spore production is unimaginably high from each plant, so seriously consider patch management as a way to slow this disease down. Read more. Small growths on roots might not be clubroot, but you can get these analyzed to make sure. ‘Patch management for clubroot. You can do it. Here’s how.’
Alternaria black spot. This is not usually an economic problem in B. napus (Argentine) canola when the crop is standing, but some superficial infection may turn swaths black as the crop dries down and dies. Alternaria tends to be more damaging in juncea or rapa (Polish) canola. In these crops, small black spots will move up the plant, eventually reaching the pods. If alternaria is to show up in napus canola, it will be later in the season when weather and time have removed the protective wax covering on the plant. UV radiation, cool/warm fluctuations and hail will break down this wax barrier. Cool wet weather can also increase alternaria infection, and rain splash can spread the disease to other plants. In cases of heavy alternaria infection (which is rare), early swathing may have an overall economic benefit to later swathing if alternaria has moved to pods. When infected areas make up 50% or more of the crop, swathing early may be the best way to salvage the yield in those infected plants. The disease can keep spreading on green material, and swathing hastens dry-down of the crop. Read more.
Aster yellows. Common symptoms include the malformed bladder-like pods, which produce little to no yield. The disease can also result in normal looking pods that contain only a few misshapen seeds. Other symptoms include sprouting in the pod, and purplish plants and pods, although this purpling can result from many potential causes. Read more.
Grey stem. Grey stem, caused by Pseudocercosporella capsellae, can be found in most canola fields when the crop is ripening, but it usually develops too late in the growing season to affect crop yields significantly. Silvery to purplish patches develop on the stem. These can cover whole stems and continue to spread in stubble as plants decompose. Grey stem can be confused with other diseases that cause stem lesions and stem discolouration, including blackleg, sclerotinia stem rot and verticillium. Differentiate grey stem from blackleg: At the end of the season, cut the top of the root at the base of the stem and look for dead blackened tissue in the crown – a characteristic of blackleg, not grey stem. Blackleg will produce prominent black spots. Differentiate grey stem from sclerotinia stem rot: With grey stem, the stem remains strong at the lesion. Sclerotinia stem rot, as the name suggests, has a pulpy stem which, when it dries up, will easily shred. Sclerotinia stems are also lighter coloured – although this distinction can be difficult unless you have sample of both infections to compare. Differentiate grey stem from verticillium stripe: Verticillium has a beige (not grey) sunken-in look at around swath timing, but will start to become grey around harvest time. Stems will shred, revealing the tiny and uniform microsclerotia under the infected layer of stem epidermis (skin). Grey stem, if it has any spots, will be on the surface and be low in number and random. Read more
Verticillium stripe. We include this on the list, but verticillium stripe is easier to identify right at or after harvest. Verticillium symptoms are not always visible during pre-harvest disease scouting. Symptoms may only show stem bleaching on one side of the stem that can easily be confused with sclerotinia stem rot. Cross section root clippings may show a greyish hue that can be mistaken for blackleg or grey stem. A better time to assess Verticillium stripe is post-harvest where the microsclerotia in the stem have fully developed. Once the plant is fully ripe, the stem peels to reveal tiny black microsclerotia which resemble ground pepper in appearance. These microsclerotia remain on the plant stem or fall to the soil. While this may seem similar to the blackleg symptom, these specks are under the stem wall for verticillium stripe and always on the surface for blackleg. See the table below for more tips on how to distinguish vertilicillium stripe from blackleg, sclerotinia stem rot and grey stem. Note that PSI Lab in Winnipeg has a new test for verticillium in canola. Manitoba Canola Growers can get free tests. Read more about verticillium in the Canola Encyclopedia.
Foot rot and brown girdling root rot. Canola plants exhibiting brown superficial symptoms at ground level likely have fusarium foot rot, which produces tan brown lesions with concentric markings. Another possibility affecting canola roots at adult stages is brown girdling root rot (BGRR), which is more of an issue in Polish canola. Symptoms of BGRR are rusty brown lesions on the canola tap root, which may girdle and pinch off the root if severe. These diseases can be much higher in tight canola rotations. Read more.
Fusarium wilt. This can cause bleached stems with a slight pinkish tinge typical of fusarium fungus. Discolouration can occur up only one side of a stem, a typical sign of fusarium wilt. This disease has been virtually eliminated through genetic resistance.
Quick comparison of blackleg, clubroot and sclerotinia stem rot
|wdt_ID||Comparisons||Blackleg||Clubroot||Sclerotinia stem rot|
|1||Susceptible host plants||Canola and other brassicas||Canola and other brassicas, including some common weeds.||Broadleaf crops, including canola, soybeans, sunflower, pulses.|
|2||Key distinguishing features||Lesions with specks of picnidia inside form on leaves. Infection spreads to the base of the stem, where it forms cankers. Clipping open stems will reveal blackened tissue inside. Moderate cases will cause yield loss, even if the plant doesn’t die. Severe||Galls form on roots. In serious cases, large tuberous galls will restrict flow of nutrients and water up and down the plant, killing the plant.||Lesions form on leaves and stems. Eventually the stems rot, then turn white and brittle. Plants die prematurely and seed set is greatly reduced. Black sclerotia form inside (and sometimes outside) damaged stems.|
|3||How it rests waiting for the next host crop||On pieces of infected canola stubble||As each gall breaks down, it releases billions of spores into the soil.||As sclerotia bodies in the soil|
|4||How it spreads||Pseudothecia and pycnidia on infected canola residue release spores that continue the infection cycle. Pycnidiospores from pycnidia travel only a few metres. Smaller ascospores, shot into the air by pseudothecia, can travel farther.||Spores move with the soil. When soil moves, clubroot moves. Soil moving through fields and from field to field on machinery is the most common vector for spread of the disease. Spores infect host roots, continuing the cycle.||Sclerotia produce apothecia that release spores. Spores can carry for kilometres on the wind, but most will come from within fields or from connecting fields. When release coincides with canola flowering and moist/humid conditions, infection can occur.|
|5||Benefit of crop rotation||2- or 3-year break between canola can almost eliminate risk because host stubble deteriorates.||2- or 3-year break between canola can reduce viable spores by 90%, but this can still be enough spores for widespread damage if spore counts start off high. (1,000,000 per gram of soil.)||Rotation benefit for sclerotinia is less than it is for blackleg and clubroot because many crops are susceptible, sclerotia are widespread and released spores carry to nearby fields. However, higher severity will be observed with shorter rotations of susc|
|6||Genetic resistance available||Yes||Yes||Improving tolerance in selected varieties|
|7||Genetic resistance groups identified||Yes||No, but coming soon?||No|
|8||How to use R varieties as part of a disease management program.||Always use R or MR varieties, and if blackleg is getting worse, switch to a different R-gene.||Use R varieties in areas where clubroot is found or suspected. This will help keep soil spore loads low and limit yield loss for the long term.||Sclerotinia-tolerant varieties can reduce disease in high-risk situations, but fungicide may still be required.|
|9||Effective fungicides available||Yes, for early-season infection||No||Yes, for application at flowering|
Canola stem diseases – A comparison
|wdt_ID||Plant Disease||Sclerotinia||Blackleg||Blackleg||Verticillium Stripe||Grey Stem||Fusarium Wilt|
|1||Species||Sclerotinia sclerotiorum||Leptosphaeria maculans||Leptosphaeria biglobosa||Verticillium longisporum||Pseudocercosporella capsellae||Fusarium oxysporum|
|2||Stem Symptoms and distinguishing features||Bleached white appearance. Infected stems tend to shred and shatter very easily. White mouldy growth. Black sclerotia bodies will form inside the stem.||Stem lesions with pycnidia (black spots) forming inside the lesion. Base of stem (crown) becomes woody. Cross section cut reveals blackening.||Shallow stem lesions with pycnidia||Shredding of the stem tissue. Stem outer skin peels back to reveal tiny black microsclerotia beneath the surface.||Large purple to grey-speckled stem. Pod lesions are also possible.||Discolouration of the stems; yellow or reddish-brown streaks on stems.|
|3||Pod||Withered pods if branch below is infected. Sometimes white mould, lesions.||No symptoms||No symptoms||No symptoms||Grey speckled pods.||No symptoms.|
|4||Crown (base of stem) exterior||Cankering|
|5||Crown cross-section||Clean, dried down||Solid black sections, often pie shaped.||Typically does not reach stem in time||Greyish hue across entire cut. More "star-burst" shaped|
|6||When to scout||Prior to swath timing||Prior to swath timing, 60% SCC.||Prior to swath timing, 60% SCC||Easier to ID post-harvest||Prior to swath timing, 60% SCC.||Prior to swath timing, 60% SCC.|
|7||Yield Loss||Potential yield loss in a field can be determined by: % Potential Yield Loss = % Infection x 0.5||For every unit of increase in disease severity, a 17% loss in plant seed yield can be expected.||Comes in too late in the season to cause a significant impact||To be determined the impact of VS here in Canada||Not known.||Varieties are resistant, rare to find.|
When in the fields scouting for disease also…
Check pods for exit holes from cabbage seedpod weevil larvae. If less than 25 per cent of pods have exit holes, the spray could be considered a success. If less than 25 per cent have exit holes and the crop was not sprayed, it was probably the correct decision. If more than 25 per cent have exit holes and the crop was not sprayed, it probably should have been.
Look for other insect damage to pods. Debarked pods (indicating bertha armyworm or grasshopper feeding), larger holes in pods (which could be from diamondback, grasshopper or bertha armyworm feeding) and brown rotted seeds (which can result from lygus penetration of the pod).
Assess crop maturity. Open up some pods and assess the degree of colour change. This can help with harvest timing decisions.
Look for root maggots while digging up roots. Their tunnelling can reduce root function (and yield) directly or can provide an entry point for root diseases that cause yield loss. Either way, severe root maggot can cause yield loss. In these cases, growers can use crop rotation and higher seeding rates to reduce canola yield losses from root maggot. What draws in the flies to lay the eggs?